PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G020500.1
Common NameB456_010G020500, LOC105771503
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 205aa    MW: 22488.9 Da    PI: 9.5248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G020500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08113153954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Gorai.010G020500.1 113 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 153
                         699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13105162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14108163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6114153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-6127158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEIDHLKSAT TQDQMETMMM QAEYNIYNDV VQLPLASPST FVESPPFITG STPGQPPSTA  60
VCPGLLKKNS MGAMREMIFR IAAMQPIHID PESVKPPKRR NVKISKDPQS VAARHRRERI  120
SERIRILQRL VPGGTKMDTA SMLDEAIHYV KFLKTQVQSL ERAAAVGGGG IGFPLGMSNG  180
ESFFSMGKGF QLHQNDGVQQ FGDV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448412.11e-151PREDICTED: transcription factor HEC2-like
SwissprotQ9SND41e-50HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A0D2SL721e-151A0A0D2SL72_G
STRINGVIT_18s0001g10400.t015e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.16e-46bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]